Bioinformatics Tools and Advanced Tutorials!
Hosted by Dr. Pritam Kumar Panda, Stanford University, School of Medicine

Reach me out here: https://www.atomodyssey.com

PandaCite: Open-Source Citation Manager Like EndNote & Mendeley | Python Based Citation Manager
5:19
PandaCite: Open-Source Citation Manager Like EndNote & Mendeley | Python Based Citation Manager
Grid Box Generator for Molecular Docking for Autodock4 or Vina | No MGLTools required
3:02
Grid Box Generator for Molecular Docking for Autodock4 or Vina | No MGLTools required
Structify: Chemical Structure Converter for Molecular Docking | SDF/PDB/SMILES to PDBQT/MOL2
3:43
Structify: Chemical Structure Converter for Molecular Docking | SDF/PDB/SMILES to PDBQT/MOL2
From Nanoseconds to Steps: Automate GROMACS Simulations with GROMACS StepWizard!
2:14
From Nanoseconds to Steps: Automate GROMACS Simulations with GROMACS StepWizard!
Autodock Grid Box using Python | No MGLTools Required
1:11
Autodock Grid Box using Python | No MGLTools Required
Nvidia Generative AI for Docking & Virtual Screening
12:06
Nvidia Generative AI for Docking & Virtual Screening
PCA and Gibbs Free Energy Calculation using Gromacs
21:21
PCA and Gibbs Free Energy Calculation using Gromacs
Fixing Missing Atoms in PDB file using Swiss PDB Viewer
3:20
Fixing Missing Atoms in PDB file using Swiss PDB Viewer
Umbrella Sampling in Gromacs | MD Simulations with CHAPERONg
35:10
Umbrella Sampling in Gromacs | MD Simulations with CHAPERONg
MMPBSA in Gromacs: ΔG Binding Free Energy Calculations
30:23
MMPBSA in Gromacs: ΔG Binding Free Energy Calculations
Post-Processing of Protein-Ligand Simulation in GROMACS
37:51
Post-Processing of Protein-Ligand Simulation in GROMACS
How to Test a nf-core Pipeline | Nextflow Tutorial
23:53
How to Test a nf-core Pipeline | Nextflow Tutorial
Apply and Participate as a Nextflow Ambassador
10:06
Apply and Participate as a Nextflow Ambassador
My PhD Defense Presentation | UPPSALA UNIVERSITY
47:16
My PhD Defense Presentation | UPPSALA UNIVERSITY
How to convert 2D SDF to 3D SDF for Docking using Open Babel
15:21
How to convert 2D SDF to 3D SDF for Docking using Open Babel
CytoExploreR: Flow Cytometry Analysis in R - Part 2
16:07
CytoExploreR: Flow Cytometry Analysis in R - Part 2
CytoExploreR: Flow Cytometry Analysis in R - Part 1
19:38
CytoExploreR: Flow Cytometry Analysis in R - Part 1
Is Bioinformatics a lucrative career in 2024?
26:53
Is Bioinformatics a lucrative career in 2024?
nf-core Nextflow Tools: Ultimate Guide to Bioinformatics Pipelines
15:14
nf-core Nextflow Tools: Ultimate Guide to Bioinformatics Pipelines
Nextflow Installation Guide: Get Started with Nextflow Today!
7:02
Nextflow Installation Guide: Get Started with Nextflow Today!
Channel Trailer
0:09
Channel Trailer
Top 16 Essential Skills for Bioinformaticians: Career Tips
1:45
Top 16 Essential Skills for Bioinformaticians: Career Tips
Flow Cytometry Data Analysis in R : A Complete Tutorial 2024
46:49
Flow Cytometry Data Analysis in R : A Complete Tutorial 2024
Multiple Ligand Docking using Autodock Vina | Bioinformatics
8:00
Multiple Ligand Docking using Autodock Vina | Bioinformatics
Ultimate Guide to Customizing Terminal on Mac & Ubuntu
1:21:47
Ultimate Guide to Customizing Terminal on Mac & Ubuntu
Anaconda and Jupyter Notebook Tutorial | Python & Genomics
55:56
Anaconda and Jupyter Notebook Tutorial | Python & Genomics
Learn RStudio and Quarto for Data Analysis | Bioinformatics
1:02:45
Learn RStudio and Quarto for Data Analysis | Bioinformatics
NEB calculations in Siesta v4.1.5 | LUA support
15:24
NEB calculations in Siesta v4.1.5 | LUA support
Nudged Elastic Band (NEB) calculations with Siesta: Part 3
22:30
Nudged Elastic Band (NEB) calculations with Siesta: Part 3
Nudged Elastic Band (NEB) calculations with Siesta: Part 2
15:16
Nudged Elastic Band (NEB) calculations with Siesta: Part 2