DnA lab short read sequencing workshop - VideoAndMovie

Single Cell Clustering and Cell Type Identification

15:48

Single Cell Clustering and Cell Type Identification

An Introduction to Cell Chat

20:49

An Introduction to Cell Chat

Single Cell Sequencing

5:30

Single Cell Sequencing

Single Cell Sequencing Analysis and Seurat

16:54

Single Cell Sequencing Analysis and Seurat

Single cell cell-type annotations

15:42

Single cell cell-type annotations

Single Cell Sequencing Analysis (Abbreviated)

8:50

Single Cell Sequencing Analysis (Abbreviated)

R for Beginners PHD Mamas version

1:21:30

R for Beginners PHD Mamas version

Introduction to BEDTools

11:23

Introduction to BEDTools

Multifactor Designs in DESeq2

21:58

Multifactor Designs in DESeq2

DnA Lab Short Read Sequencing Workshop BIOTA18 7 21 2021

3:04:05

DnA Lab Short Read Sequencing Workshop BIOTA18 7 21 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 22 2021

3:04:05

DnA Lab Short Read Sequencing Workshop BIOTA18 7 22 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 20 2021

3:04:05

DnA Lab Short Read Sequencing Workshop BIOTA18 7 20 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 26 2021 complete video only

3:04:05

DnA Lab Short Read Sequencing Workshop BIOTA18 7 26 2021 complete video only

DnA Lab Short Read Sequencing Workshop BIOTA18 7 19 2021

3:04:05

DnA Lab Short Read Sequencing Workshop BIOTA18 7 19 2021

Visualizing sequencing data

12:20

Visualizing sequencing data

Running Bowtie2

19:06

Running Bowtie2

Bowtie2 Overview

13:11

Bowtie2 Overview

Read mapping

8:47

Read mapping

Trimmomatic with Slurm

11:55

Trimmomatic with Slurm

Trimmomatic

10:13

Trimmomatic

Running FastQC

11:06

Running FastQC

Post sequencing quality evaluation

22:53

Post sequencing quality evaluation

Unix permissions

6:15

Unix permissions

Intro to the workshop

7:00

Intro to the workshop

file system paths

3:27

file system paths

vim tutorial

9:14

vim tutorial

stdout stderr GREP WC

4:53

stdout stderr GREP WC

Remote RSYNC, Reading Files

5:20

Remote RSYNC, Reading Files

Isoform differential expression analysis with Ballgown

7:59

Isoform differential expression analysis with Ballgown

Isoform analysis using Stringtie

6:27

Isoform analysis using Stringtie