This is Luis Pedro Coelho's lab (BDB-Lab)

We post tutorials on our tools, highlights of our work, and other content

To get in touch: [email protected]

Eating your own dog food does lead to better foo (EOS S2E25 recap)
8:26
Eating your own dog food does lead to better foo (EOS S2E25 recap)
Off by a factor of three (EOS S2E24 recap)
10:03
Off by a factor of three (EOS S2E24 recap)
Better is better (EOS S2E20 recap)
5:19
Better is better (EOS S2E20 recap)
SemiBin version 2.2.0 released
4:07
SemiBin version 2.2.0 released
How to install SemiBin using pixi (including GPU support)
5:48
How to install SemiBin using pixi (including GPU support)
The calm after the storm (EOS S2E19 recap)
9:44
The calm after the storm (EOS S2E19 recap)
A week of consolidation (EOS S2E18 recap)
8:58
A week of consolidation (EOS S2E18 recap)
A trick to get deterministic random choices
6:49
A trick to get deterministic random choices
Scaling up (EOS S2E17 recap)
12:08
Scaling up (EOS S2E17 recap)
Expanding our genome set, building up to everything (EOS S2E16 recap)
7:15
Expanding our genome set, building up to everything (EOS S2E16 recap)
Progress towards a score (EOS S2E15 recap)
11:11
Progress towards a score (EOS S2E15 recap)
EOS S2E12 pseudo-stream
1:02:25
EOS S2E12 pseudo-stream
Better reference, better results? (EOS S2E11 recap)
11:08
Better reference, better results? (EOS S2E11 recap)
Splitting files for robustness (EOS S2E10 recap)
13:13
Splitting files for robustness (EOS S2E10 recap)
Waiting for Godot (DIAMOND), EOS S2E9 recap
7:50
Waiting for Godot (DIAMOND), EOS S2E9 recap
Back from travel, looking at outliers (EOS, S2E8 recap)
11:29
Back from travel, looking at outliers (EOS, S2E8 recap)
Sustainable Research Software
8:15
Sustainable Research Software
Macrel 1.4.0. Querying the global AMPSphere
6:31
Macrel 1.4.0. Querying the global AMPSphere
Comparing oranges to mandarines (EOS S2E7 recap)
9:46
Comparing oranges to mandarines (EOS S2E7 recap)
Fumbling around, finding patterns (EOS S2E6 recap)
8:35
Fumbling around, finding patterns (EOS S2E6 recap)
June 2024 quarterly updates
3:27
June 2024 quarterly updates
A mystery solved and everything is back to normal (EOS S2E5 recap)
14:35
A mystery solved and everything is back to normal (EOS S2E5 recap)
Some very strange results: there is a bug somewhere (EOS S2E4 recap)
15:11
Some very strange results: there is a bug somewhere (EOS S2E4 recap)
Advanced use of Jug to load data from a jugfile (EOS S2E3 extra content)
4:06
Advanced use of Jug to load data from a jugfile (EOS S2E3 extra content)
checkM2 completeness metrics do pick up simulated mutations (EOS S2E3 recap)
15:55
checkM2 completeness metrics do pick up simulated mutations (EOS S2E3 recap)
A few mutations are enough to make genes noticeably smaller (EOS S2E2 recap)
13:10
A few mutations are enough to make genes noticeably smaller (EOS S2E2 recap)
Extremely Open Science Season 2 Episode 1 recap
16:28
Extremely Open Science Season 2 Episode 1 recap
SemiBin2 Tutorial
15:07
SemiBin2 Tutorial
Open Office Hours: April 24 & May 9
0:53
Open Office Hours: April 24 & May 9
EOS 4 recap
7:44
EOS 4 recap